Phenotype Classification of Zebrafish Embryos by Supervised Learning

Zebrafish is increasingly used to assess biological properties of chemical substances and thus is becoming a specific tool for toxicological and pharmacological studies. The effects of chemical substances on embryo survival and development are generally evaluated manually through microscopic observation by an expert and documented by several typical photographs. Here, we present a methodology to automatically classify brightfield images of wildtype zebrafish embryos according to their defects by using an image analysis approach based on supervised machine learning. We show that, compared to manual classification, automatic classification results in 90 to 100% agreement with consensus voting of biological experts in nine out of eleven considered defects in 3 days old zebrafish larvae. Automation of the analysis and classification of zebrafish embryo pictures reduces the workload and time required for the biological expert and increases the reproducibility and objectivity of this classification.     

Migration of Naphthalene through Low Organic Content Sandy Soil Columns: Comparison of Unsaturated and Saturated Conditions

The transient transport of naphthalene through low organic matter content soil columns was investigated in different water-saturation and flow conditions. Some parameters were tested as flow rate, column height, and water saturation conditions. The soil was a clayed sandy soil from the Algerian coast near Boumerdes. The organic carbon content was 0.13% and the main mineral components were quartz (88%), clays minerals (7%) and calcite (3%). The height of the packing of the soil column (5.1 cm in diameter) varied from 15 to 40 cm. Simultaneous step injections of inert tracer (calcium chloride) and naphthalene at 10 mg L^?1 were performed. Tracer and naphthalene breakthrough curves (BTCs) were measured continuously by conductimetry and UV – 220 nm, respectively. The BTCs were simulated using the classical mixing cells in series with exchange model (MCE). In unsaturated conditions the comparison of the mean residence time of tracer BTCs with the geometrical pore volume gave us access to average water saturation along the column as a function of height. The higher the soil bed was, the higher the mean water saturation. The comparison of naphthalene distribution coefficients (K_d) in different flow conditions with the theoretical value from the Karickhoff law showed that in saturated conditions the obtained value was close to the theoretical one. In unsaturated conditions, the measured naphthalene K_d's were much lower than the theoretical value and correlated to the water saturation.     

Use of time in a decision‐making process by a parasitoid

1. Time perception is seldom studied in invertebrates, with the limited experimental evidence being insufficient to provide a comprehensive pattern of the capacity of invertebrates to measure time and use it in decision‐making processes. 2. In this study, it was hypothesized that insect parasitoids have evolved the capacity to measure time precisely and to use it to optimize foraging decisions related to host exploitation. To examine time perception in females of the gregarious egg parasitoid Trichogramma euproctidis, the present study used their ability to adjust their investment (number of eggs laid) in a host to the initial transit duration (interval between the first contact with the host and the following contact with the substrate). Females utilize this method to assess host egg size, as a large egg necessarily requires more time to evaluate than a small host. In this study, the initial transit duration for a given sized egg was artificially extended by suspending it. 3. For similar sized hosts, female T. euproctidis significantly increased both oviposition duration and progeny allocation following a longer initial transit duration. 4. These results demonstrate the intrinsic capacity of this parasitoid to measure time and to adjust their progeny investment accordingly. This is believed to be one of the few demonstrations of a retrospective measure of time in an invertebrate.     

The urticating setae of Ochrogaster lunifer,an Australian processionary caterpillar of veterinary importance

The bag‐shelter moth, Ochrogaster lunifer Herrich‐Schaffer (Lepidoptera: Notodontidae), is associated with a condition called equine amnionitis and fetal loss (EAFL) on horse farms in Australia. Setal fragments from O. lunifer larvae have been identified in the placentas of experimentally aborted fetuses and their dams, and in clinical abortions. The gregarious larvae build silken nests in which large numbers cohabit over spring, summer and autumn. The final instars disperse to pupation sites in the ground where they overwinter. Field‐collected O. lunifer larvae, their nests and nearby soil were examined using light and electron microscopy to identify setae likely to cause EAFL and to determine where and how many were present. Microtrichia, barbed hairs and true setae were found on the exoskeletons of the larvae. True setae matching the majority of setal fragments described from equine tissue were found on third to eighth instar larvae or exuviae. The number of true setae increased with the age of the larva; eighth instars carried around 2.0–2.5 million true setae. The exuvia of the pre‐pupal instar was incorporated into the pupal chamber. The major sources of setae are likely to be nests, dispersing pre‐pupal larvae and their exuviae, and pupal chambers.